Index

A

a2ihelper module a2ihelper.call_reditools2 module a2ihelper.filter module

a2ihelper.plot module a2ihelper.stats module anova_tukey_test() (in module a2ihelper.stats)

B

boxplot() (in module a2ihelper.plot)

C

call_snp_vep() (in module a2ihelper.filter) chi2_test() (in module a2ihelper.stats)

conditon_pearson_corr() (in module a2ihelper.stats) confidence_ellipse() (in module a2ihelper.plot) corr_pearson_plot() (in module a2ihelper.plot)

E

entropy_calculation() (in module a2ihelper.stats)

entropy_plot() (in module a2ihelper.plot)

F

filter_gtest() (in module a2ihelper.filter) filter_positions() (in module a2ihelper.filter)

filter_snps_vep() (in module a2ihelper.filter) fisher_test() (in module a2ihelper.stats)

G

gene_pearson_corr() (in module a2ihelper.stats)

get_genes_positions() (in module a2ihelper.call_reditools2) get_utr_genes_positions() (in module a2ihelper.call_reditools2)

I

independency_gtest() (in module a2ihelper.filter)

indexing_ref() (in module a2ihelper.call_reditools2)

K

kruskal_dunn_test() (in module a2ihelper.stats)

M

manhattanplot() (in module a2ihelper.plot) mannwhitney_test() (in module a2ihelper.stats) merge_files_all_regions() (in module a2ihelper.filter) merge_files_one_region() (in module a2ihelper.filter) module a2ihelper a2ihelper.call_reditools2 a2ihelper.filter a2ihelper.plot a2ihelper.stats

O

odds_r() (in module a2ihelper.stats)

P

pca() (in module a2ihelper.plot)

pool_positions() (in module a2ihelper.filter)

R

replace_nan_by_zero() (in module a2ihelper.filter)

run_per_gene_position() (in module a2ihelper.call_reditools2) run_per_gene_position_list() (in module a2ihelper.call_reditools2)

T

t_student_test() (in module a2ihelper.stats)

tsne() (in module a2ihelper.plot)

V

volcanoplot() (in module a2ihelper.plot)