src

• a2ihelper package
  • Submodules
  • a2ihelper.call_reditools2 module
    • get_genes_positions()
    • get_utr_genes_positions()
    • indexing_ref()
    • run_per_gene_position()
    • run_per_gene_position_list()
  • a2ihelper.filter module
    • call_snp_vep()
    • filter_gtest()
    • filter_positions()
    • filter_snps_vep()
    • independency_gtest()
    • merge_files_all_regions()
    • merge_files_one_region()
    • pool_positions()
    • replace_nan_by_zero()
  • a2ihelper.stats module
    • anova_tukey_test()
    • chi2_test()
    • conditon_pearson_corr()
    • entropy_calculation()
    • fisher_test()
    • gene_pearson_corr()
    • kruskal_dunn_test()
    • mannwhitney_test()
    • odds_r()
    • t_student_test()
  • a2ihelper.plot module
    • boxplot()
    • confidence_ellipse()
    • corr_pearson_plot()
    • entropy_plot()
    • manhattanplot()
    • pca()
    • tsne()
    • volcanoplot()
  • Module contents